Biochemical Genetics Lab

Selected Papers

Sorg, A., Luo, Z., Li, Q.B., Roy, K., Gilles, B., Kim, J., Hunter, C., Chapple, C., Rering, C., and Block, A. The Airborne herbivore-induced plant volatile indole is converted to benzoxazinoid defense compounds in neighboring maize plants. New Phytologist. org/10.1111/nph.70004 (2025)
Singh, D.M., Zhao, H.^G, Kumar, Y., Kim, J., and Pawar, P.A. Characterization of the Arabidopsis eskimo 1 reveals a metabolic link between the xylan O-acetylation and aliphatic glucosinolate metabolism. Physiologia Plantarum http://dx.doi.org/10.1111/ppl.14618 (2024)
Zhao, H.^G, Shin, D.^P, , Y., and Kim, J. Bridging the knowledge gap: Utilization of Mediator Subunits for Crop Improvement. Plant Cell & Environment http://doi.org/10.1111/pce.15142 (2024)
Jang, Y.J.^p, Kim, T.^g, Lin, M.^G, Kim, J., Begcy, K., Liu, Z., and Lee, S. Genome-wide transcriptome dyanmics in auxin homeostasis during fruit development in Strawberry ( x ananassa) BMC Plant Biology doi.org/10.1186%2Fs12870-024-05577-5 (2024)
Shin, D.^P, Perez, V.C.^G, and Kim, J. Aldoximes: Compounds at the Crossroads of Multiple Metabolic Pathways in Plant. Phytochemistry Review org/10.1007/s11101-024-09950-y (2024)
Shin, D.^P, Cho. K.H.^&, Tucker, E.^G, Yoo, , and Kim, J. Identification of tomato F-box proteins functioning in phenylpropanoid metabolism. Plant Molecular Biology doi: 10.1007/s11103-024-01483-4 (2024)
Zhao, H.G, Shin, D.P, Zhu., Y., and Kim, J. (2024) Bridging the knowledge gap: Utilization of Mediator Subunits for Crop Improvement. Plant Cell & Environment http://doi.org/10.1111/pce.15142
Shin, D.P, Cho. K.H.&, Tucker, E.G, Chan Yul Yoo, and Kim, J. Identification of tomato F-box proteins functioning in phenylpropanoid metabolism. Plant Molecular Biology doi: 10.1007/s11103-024-01483-4 (2024)
Shin, D.P, Perez, V.C.G, and Kim, J. Aldoximes: Compounds at the Crossroads of Multiple Metabolic Pathways in Plant. Phytochemistry Review doi.org/10.1007/s11101-024-09950-y (2024)
Zhao, H.G, Shin, D.P, Zhu., Y., and Kim, J. (2024) Bridging the knowledge gap: Utilization of Mediator Subunits for Crop Improvement. Plant Cell & Environment http://doi.org/10.1111/pce.15142
Shin, D.^P, Cho. K.H.^&, Tucker, E.^G, Chan Yul Yoo, and Kim, J. Identification of tomato F-box proteins functioning in phenylpropanoid metabolism. Plant Molecular Biology doi: 10.1007/s11103-024-01483-4 (2024)
Shin, D.^P, Perez, V.C.^G, and Kim, J. Aldoximes: Compounds at the Crossroads of Multiple Metabolic Pathways in Plant. Phytochemistry Review doi.org/10.1007/s11101-024-09950-y (2024)
Shin, D.^G, Perez, V.C.^G, Dickinson, G.K.^g, Zhao, H.^G, Dai, R.^&, Tomiczek B.^g, Askey, B.C.^U, Cho, K.H.^&, Zhu, N., Koh, J., Grenning, A., and Kim, J Altered methionin metabolism impacts phenylpropanoid production and plant development in Arabidopsis thaliana. The Plant Journal. doi.org/10.1111/tpj.16370 (2023)
Perez, V.C.^G, Zhao, H.^G., Lin, M^G., and Kim, J. Occurrence, Function, and Biosynthesis of the Natural Auxin Phenylacetic Acid (PAA) in Plants. Plants doi:org/10.3390/plants12020266 (2023)
Belisle, C.E.^g, Sargent S.A., Sandoya, G. V., Brecht, J.F., Dai, R.^&, Askey, B^U., Lei, Z., Lin, M^G., and Kim, J. Melatonin reduces pink rib discoloration in wounded lettuce midribs without affecting PAL and PPO activities, or chlorogenic acid concentration. Postharvest Biology and Technology submitted doi.org/10.1016/j.postharvbio.2023.112307 (2023)
Perez, V.CG., Dai, R&., Tomiczek, B. g, Mendoza , J., Wolf, E.S.A. g, Grenning, A., Vermerris, W., Block, A.K., and Kim, J Metabolic link between auxin production and specialized metabolites in Sorghum bicolor. Journal of Experimental Botany doi:org/10.1093/jxb/erac421 (2022)
Askey, B.C.^U., Liu, D.^g, Rubin, G.M.^u, Kunik A.R., Song, Y.H^&., Ding, Y.^U, and Kim, J. Metabolite profiling reveals organ-specific flavone accumulation in Scutellaria and identifies a scutellarin isomer isoscutellarein 8-O-β-glucuronopyranoside. Plant Direct. doi.org/10.1002/pld3.372 (2021) (selected as the article of the week)
Perez, V.C^G., Dai, R^&., Block, A.K., and Kim, J Metabolite analysis of Arabidopsis CYP79A2 overexpression lines reveals turnover of benzyl glucosinolate and an additive effect of different aldoximes on phenylpropanoid repression. Plant Signaling & Behavior. doi.org/10.1080/15592324.2021.1966586 (2021)
Perez, V.C^G., Dai, R^&., Bai B^P., Tomiczek B^g., Askey, B.C^U., Zhang, Y^p., Rubin, G.M^g., Ding, Y., Grenning, A., Block, A.K., and Kim, J Aldoximes are precursors of auxins in Arabidopsis and maize. New Phytologist. 231:1449-1461 doi.org/10.1111/nph.17447 (2021)
Kim, J.I., Hidalgo-Shrestha, C., Bonawitz, N.D., Franke, R.B., and Chapple, C. Spatio-temporal control of phenylpropanoid biosynthesis by inducible completmentation of a cinnamate 4-hydroyxlase mutant. Journal of Experimental Botany 72(8) 3061-3073 (2021)
Zhang, D.^&, Song, Y.H.^&, Dai, R.^&, Lee, T.G., and Kim, J Aldoxime metabolism is linked to phenylpropanoid production in Camelina sativa. Frontiers in Plant Science 11:17 doi:10.3389/fpls.2020.00017. (2020)
Kim, J.I., Zhang, X., Pascuzzi, P.E., Liu, C.-J. and Chapple, C. Glucosinolate and phenylpropanoid biosynthesis are linked by proteasome-dependent degradation of PAL. New Phytologist, 225(1), 154-168 (2020)
Askey, B.C.^U, Dai, R.^&, Lee, W.S., and Kim, J A noninvasive, machine learning based method for monitoring anthocyanin accumulation in plants using digital color imaging. Applications in Plant Sciences 7(11):e11301. (2019)