Zhang, J., Muller, B.S., Tyre, K.N., Hersh, H.L., Bai, F., Hu, Y., Resende, M.F.R. Jr., Rathinasabapathi, B., Settles, A.M. (2020) Competitive growth assay of mutagenized Chlamydomonas reinhardtii compatible with the International Space Station Veggie Plant Growth Chamber. Front. Plant Sci. (https://doi.org/10.3389/fpls.2020.00631)
Ribeiro, C., Hennen-Bierwagen, T.A., Myers, A.M., Cline, K., Settles, A. M. (2020) Engineering 6-phosphogluconate dehydrogenase to improve heat tolerance in maize seed development. BioRxiv, pre-print. (https://doi.org/10.1101/2020.05.21.108985)
Hacisalihoglu G., Freeman J., Armstrong P.R., Seabourn B.W., Porter L.D., Settles A.M., Gustin J.L. (2020) Protein, weight, and oil determination by single-seed near-infrared spectroscopy for selection of seed quality and yield traits in pea (Pisum sativum). J. Science Food Agriculture.(https://doi.org/10.1002/jsfa.10389)
Gillmor C.S., Settles A.M., Lukowitz W. (2020) Genetic screens to target embryo and endosperm pathways in Arabidopsis and maize. Methods Mol Biol. 2122:3-14. (https://doi/10.1007/978-1-0716-0342-0_1).
Zhang J., Wu S., Boehlein S.K., McCarty D.R., Myers A., Settles A.M. (2019) Maize defective kernel5 (dek5) is homologous to bacterial TamB and required for chloroplast envelope biogenesis. J. Cell Biol., 218(8):2638-2658. (https://doi.org/10.1083/jcb.201807166).
Boehlein S., Liu P., Webster A., Ribeiro C., Suzuki M., Wu S., Guan J.C., Stewart J., Tracy W., Settles A.M., McCarty D., Koch K., Hannah L.C., Hennen-Bierwagen T., Myers A. (2019) Effects of long-term exposure to elevated temperature on Zea mays endosperm development during grain fill. Plant J., 99(1):23-40. (https://doi/10.1111/tpj.14283).
Bai F., Corll J., Shodja D., Davenport R., Feng G., Mudunkothge J., Brigolin C.J., Martin F., Spielbauer G., Tseung C.W., Seibert A.E., Barbazuk W.B., Lal S., Settles A.M. (2019) RNA Binding Motif Protein48 is required for U12 splicing and maize endosperm differentiation. Plant Cell 31(3):715-733. (https://doi.org/10.1101/341917).
Springer N.M., Anderson S.N., Andorf C.M., Ahern K.R., Bai F., Barad O., Barbazuk W.B., Bass H.W., Baruch K., Ben-Zvi G., Buckler E.S., Bukowski R., Campbell M.S., Cannon E.K.S., Chomet P., Dawe R.K., Davenport R., Dooner H.K., Du L.H., Du C., Easterling K.A., Gault C., Guan J.C., Hunter C.T., Jander G., Jiao Y., Koch K.E., Kol G., Köllner T.G., Kudo T., Li Q., Lu F., Mayfield-Jones D., Mei W., McCarty D.R., Noshay J.M., Portwood J.L. 2nd, Ronen G., Settles A.M., Shem-Tov D., Shi J., Soifer I., Stein J.C., Stitzer M.C., Suzuki M., Vera D.L., Vollbrecht E., Vrebalov J.T., Ware D., Wei S., Wimalanathan K., Woodhouse M.R., Xiong W., Brutnell T.P. (2018) The maize W22 genome provides a foundation for functional genomics and transposon biology. Nat Genet. 50(9):1282-1288. (https://doi:10.1038/s41588-018-0158-0).
Hacisalihoglu G., Kantanka S., Miller N., Gustin J.L., Settles A.M. (2018) Modulation of early seedling performance via priming under sub-optimal temperatures. PLOS One 13(11): e0206861. (https://doi.org/10.1371/journal.pone.0206861).
Gustin J.L., Boehlein S.K., Shaw J.R., Junior W., Settles A.M., Webster A., Tracy W.F. Hannah L.C. (2018) Ovary abortion is prevalent in diverse maize inbred lines and is under genetic control. Scientific Reports. 8:13032. (https://doi.org/10.1038/s41598-018-31216-9).
Hacisalihoglu G., Burton A.L., Gustin J.L., Eker S., Asikli S., Heybet E.H., Ozturk L., Cakmak I., Yazici A., Burkey K.O., Orf J., Settles A.M. (2018) Quantitative trait loci associated with soybean seed weight and composition under different phosphorus levels. J. Integr. Plant Biol. 60(3):232-241. (https://doi.org/10.1111/jipb.12612).
Lappe R.R., Baier J.W., Boehlein S.K, Huffman R., Lin Q., Settles A.M., Hannah L.C., Stewart J.D., Scott M.P., Hennen-Bierwagen T.A., Myers A.M. (2018) Functions of maize genes encoding pyruvate orthophosphate dikinase in developing endosperm. Proc. Natl. Acad. Sci. U.S.A., pii: 201715668. (https://doi.org/10.1073/pnas.1715668115).
Hacisalihoglu G., Settles A.M. (2017) Quantification of seed ionome variation in 90 diverse soybean (Glycine max) lines, J. Plant Nutrition. 40:20, 2808-2817. (https://doi.org/10.1080/01904167.2017.1382528).
Gault C.M., Martin F., Mei W., Bai F., Black J.B., Barbazuk W.B., Settles A.M. (2017) Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development. Proc. Natl. Acad. Sci. U.S.A., 114:E2195-E2204. (https://doi.org/10.1073/pnas.1616173114).
Bai F., Daliberti M., Bagadion A., Xu M., Li Y., Baier J., Tseung C.W., Evans M.M., Settles A.M. (2016) Parent-of-origin-effect rough endosperm mutants in maize. Genetics. 204: 221-231. (https://doi.org/10.1534/genetics.116.191775).
Hacisalihoglu G., Gustin J.L., Louisma J., Armstrong P., Peter G.F., Walker A.R., Settles A.M. (2016) Enhanced single seed trait predictions in soybean (Glycine max) and robust calibration model transfer with near infrared reflectance spectroscopy. J. Agr. Food Chem. 64: 1079-1086. (https://doi.org/10.1021/acs.jafc.5b05508).
Bai F., Settles A.M. (2015) Imprinting in plants as a mechanism to generate seed phenotypic diversity. Frontiers in Plant Science 5: 780. (https://doi.org/10.3389/fpls.2014.00780).
Gustin J.L., Settles A.M. (2015) Seed Phenomics. In R Fritsche-Neto, A Borém, eds, Phenomics. Springer International Publishing, Cham, Switzerland, pp 67-82. (https://doi.org/10.1007/978-3-319-13677-6_5).
Gault C.M., Settles A.M. (2014) Functional Genomics, In: Genetics, Genomics, and Breeding of Maize (eds. R. Wusirika, M. Bohn, J. Lai), CRC Press, Boca Raton, FL, USA, pp. 131-154.
Settles A.M., Bagadion A.M., Bai F., Zhang J., Barron B., Leach K., Mudunkothge J., Hoffner C., Bihmidine S., Finefield E., Hibbard J., Dieter E., Malidelis I.A., Gustin J.L., Karbolyte V., Tseung C.W., Braun D.M. (2014) Efficient molecular marker design using the MaizeGDB Mo17 SNPs and Indels track. G3: Genes, Genomes, Genetics 4(6):1143-1145. (https://doi.org/10.1534/g3.114.010454).
Gustin J.L., Jackson S., Williams C., Patel A., Armstrong P., Peter G.F., Settles A.M. (2013) Analysis of maize (Zea mays) kernel density and volume using microcomputed tomography and single-kernel near-infrared spectroscopy. J. Agric. Food Chem. 61:10872-10880. (https://doi.org/10.1021/jf403790v).
Spielbauer G., Li L., Margl L., Do P.T., Fouquet R., Fernie A.R., Eisenreich W., Gierl A., Settles A.M. (2013) Chloroplast-localized 6-phosphogluconate dehydrogenase is critical for maize endosperm starch accumulation. J Exp Bot. 64(8):2231-2242. (https://doi.org/10.1093/jxb/ert082).
Gustin J.L., Settles A.M. (2013) Machine vision for seed phenomics, in Seed Genomics (ed P. W. Becraft), Wiley, Hoboken, NJ. pp. 237-251.
Hacisalihoglu G., Settles A.M. (2013) Natural variation in seed composition of 91 common bean genotypes and their possible association with seed coat color. J. Plant Nutrition 36(5):772-780. (https://doi.org/10.1080/01904167.2012.754041).
Baxter I.R., Gustin J.L., Settles A.M., Hoekenga O.A. (2013) Ionomic characterization of maize kernels in the intermated B73 x Mo17 (IBM) population. Crop Sci. 53(1):208-220. (https://doi.org/10.2135/cropsci2012.02.0135).
Fouquet R., Martin F., Fajardo D.S., Gault C.M., Gómez E., Tseung C.W., Policht T., Hueros G., Settles A.M. (2011) Maize Rough Endosperm3 encodes an RNA splicing factor required for endosperm cell differentiation and has a nonautonomous effect on embryo development. Plant Cell. 23(12):4280-4297. (https://doi.org/10.1105/tpc.111.092163).
Martin F., Dailey S., Settles A.M. (2010) Distributed Simple Sequence Repeat (SSR) markers for efficient mapping from maize public mutagenesis populations. Theor. Appl. Genetics. 121(4):697-704. (https://doi.org/10.1007/s00122-010-1341-6).
Hacisalihoglu G, Larbi B, Settles AM. (2010) Near-infrared reflectance spectroscopy predicts protein, starch, and seed weight in intact seeds of common bean (Phaseolus vulgaris L.). J Agric Food Chem. 58(2):702-706. (https://doi.org/10.1021/jf9019294).
Spielbauer, G., Armstrong, P., Baier, J.W., Allen, W.B., Richardson, K., Shen, B., Settles, A.M. (2009) High-throughput near-infrared reflectance spectroscopy for predicting quantitative and qualitative composition phenotypes of individual maize kernels. Cereal Chem. 86(5):556–564. (https://doi.org/10.1094/CCHEM-86-5-0556).
Settles AM (2009) Transposon tagging and reverse genetics. In Molecular Genetic Approaches to Maize Improvement (eds. A.L. Kriz and B.A. Larkins) Springer-Verlag, Berlin, pp.143-160. (https://doi.org/10.1007/978-3-540-68922-5_11).
Suzuki M, Latshaw S, Sato Y, Settles AM, Koch KE, Hannah LC, Kojima M, Sakakibara H, McCarty DR (2008) The Maize Viviparous8 locus, encoding a putative ALTERED MERISTEM PROGRAM1-like peptidase, regulates abscisic acid accumulation and coordinates embryo and endosperm development. Plant Physiol. 146(3):1193-1206. (https://doi.org/10.1104/pp.107.114108).
Settles AM, Holding DR, Tan BC, Latshaw SP, Liu J, Suzuki M, Li L, O'brien BA, Fajardo DS, Wroclawska E, Tseung CW, Lai J, Hunter CT 3rd, Avigne WT, Baier J, Messing J, Hannah LC, Koch KE, Becraft PW, Larkins BA, McCarty DR. (2007) Sequence-indexed mutations in maize using the UniformMu transposon-tagging population. BMC Genomics. 8(1): 116. (https://doi.org/10.1186/1471-2164-8-116).
Baye, T.M., Pearson, T.C., Settles, A.M. (2006) Development of a calibration to predict maize seed composition using single kernel near infrared spectroscopy. J. Cereal Science. 43(2): 236-243. (https://doi.org/10.1016/j.jcs.2005.11.003).
Porch, T., Tseung, C.W., Schmelz, E., Settles, A.M. (2006) The maize Viviparous10/ Viviparous13 locus encodes the Cnx1 gene required for molybdenum cofactor biosynthesis. Plant J. 45(2): 250-263.
Suzuki, M., Settles, A.M., Tseung, C.W., Li, Q.B., Latshaw, S., Wu, S., Porch, T., James, M., McCarty, D.R. (2006) The maize viviparous15 locus encodes the molybdopterin synthase small subunit. Plant J. 45(2): 264-275. (https://doi.org/10.1111/j.1365-313X.2005.02620.x).
Settles, A.M. (2005) Maize community resources for forward and reverse genetics. Maydica, 50: 405-414. 50th Anniversary Issue
McCarty, D.R., Settles, A.M., Suzuki, M., Tan, B.C., Latshaw, S., Porch, T., Robin, K., Baier, J., Avigne, W., Lai, J., Messing, J., Koch, K.E., Hannah, L.C. (2005) Steady-state transposon mutagenesis in maize. Plant J. 44(1): 52-61. (https://doi.org/10.1111/j.1365-313X.2005.02509.x).
Settles A.M., Baron A., Barkan A., Martienssen R.A. (2001) Duplication and suppression of chloroplast protein translocation genes in maize. Genetics. 157(1): 349-360. (http://www.genetics.org/content/157/1/349.long).
Summer E.J., Mori H., Settles A.M., Cline K. (2000) The thylakoid delta pH-dependent pathway machinery facilitates RR-independent N-tail protein integration. Journal of Biological Chemistry. 275(31): 23483-23490. (https://doi.org/10.1074/jbc.M004137200).
Settles A.M., Martienssen R. (1998) Old and new pathways of protein export in chloroplasts and bacteria. Trends in Cell Biology. 8(12): 494-501. (https://doi.org/10.1016/S0962-8924(98)01387-7).
Settles A.M., Byrne M. (1998) Opportunities and challenges grow from Arabidopsis genome sequencing. Genome Research. 8(2): 83-85. (https://doi.org/10.1101/gr.8.2.83).
Settles A.M., Yonetani A., Baron A., Bush D.R., Cline K., Martienssen R. (1997) Sec-independent protein translocation by the maize Hcf106 protein. Science. 278(5342): 1467-1470. (https://doi.org/10.1126/science.278.5342.1467).
Settles A.M., Mierson S. (1993) Ion transport in rat tongue epithelium in vitro: a developmental study. Pharmacology, Biochemistry and Behavior. 46(1): 83-88. (https://doi.org/10.1016/0091-3057(93)90321-J).
