Publications
| Authors | Year | Title / Description | Publication |
|---|---|---|---|
| Ferrao, L.; Dhakal, R.; Dias, R.; Tieman, D.; Whitaker, V.; Gore, M.; Messina, C.; Resende, M. | 2023 | Machine learning applications to improve flavor and nutritional content of horticultural crops through breeding and genetics | Current Opinion in Biotechnology 83: 102968 |
| Barnett, J.; Tieman, D.; Caicedo, A. | 2023 | Variation in ripe fruit volatiles across the tomato clade: An evolutionary framework for studying fruit scent diversity in a crop wild relative | American Journal of Botany 110: e16223 |
| Sapkota, M.; Pereira, L.; Wang, Y.; Zhang, L.; Topcu, Y.; Tieman, D.; van der Knaap, E. | 2023 | Structural variation underlies functional diversity at methyl salicylate loci in tomato | Plos Genetics 19: e1010751 |
| Kaur, G.; Abugu, M.; Tieman, D. | 2023 | The dissection of tomato flavor: biochemistry, genetics, and omics | Frontiers in Plant Science 14: 1144113 |
| Li, X.; Tieman, D.; Alseekh, S.; Fernie, A.; Klee, H. | 2023 | Natural variations in the Sl-AKR9 aldo/keto reductase gene impact fruit flavor volatile and sugar contents | Plant Journal 115: 1134-1150 |
| Zhang, H.; Zhu, X.; Xu, R.; Yuan, Y.; Abugu, M.; Yan, C.; Tieman, D.; Li, X. | 2023 | Postharvest chilling diminishes melon flavor via effects on volatile acetate ester biosynthesis | Frontiers in Plant Science 13: 1067680 |
| Lee, T.; Klee, H.; Tieman, D. | 2023 | Field evaluation of CRISPR-Cas9-driven brachytic and jointless pedicel tomatoes identifies an association between the high extra-large-sized fruit yield of the brachytic-mediated shortened tomato and the jointless2 | Horticulture Environment and Biotechnology 64: 511-516 |
| Fan, Z.; Tieman, D.; Knapp, S.; Zerbe, P.; Famula, R.; Barbey, C.; Folta, K.; Amadeu, R.; Lee, M.; Oh, Y.; et al. | 2022 | A multi-omics framework reveals strawberry flavor genes and their regulatory elements | New Phytologist 236: 1089-1107 |
| Colantonio, V.; Ferra, L.; Tieman, D.; Bliznyuk, N.; Sims, C.; Klee, H.; Munoz, P.; Resende, M. | 2022 | Metabolomic selection for enhanced fruit flavor | Proceedings of the National Academy of Sciences 119: e2115865119 |
| Frick, E.; Sapkota, M.; Pereira, L.; Wang, Y.; Hermanns, A.; Giovannoni, J.; van der Knaap, E.; Tieman, D.; Klee, H. | 2022 | A family of methyl esterases converts methyl salicylate to salicylic acid in ripening tomato fruit | Plant Physiology 191: 10-124 |
| Ferrao, L.; Sater, H.; Lyrene, P.; Amadeu, R.; Sims, C.; Tieman, D.; Munoz, P. | 2022 | Terpene volatiles mediates the chemical basis of blueberry aroma and consumer acceptability | Food Research International 158: 111468 |
| Bizzio, L.; Tieman, D.; Munoz, P. | 2022 | Branched-Chain Volatiles in Fruit: A Molecular Perspective | Frontiers in Plant Science 12: 814138 |
| Pereira, L.; Sapkota, M.; Alonge, M.; Zheng, Y.; Zhang, Y.; Razifard, H.; Taitano, N.; Schatz, M.; Fernie, A.; Wang, Y.; et al. | 2021 | Natural Genetic Diversity in Tomato Flavor Genes | Frontiers in Plant Science 12:1-23 |
| Aono, Y.; Asikin, Y.; Wang, N.; Tieman, D.; Klee, H.; Kusano, M. | 2021 | High-Throughput Chlorophyll and Carotenoid Profiling Reveals Positive Associations with Sugar and Apocarotenoid Volatile Content in Fruits of Tomato Varieties in Modern and Wild Accessions | Metabolites 11:398 |
| Liscombe, D. K., Kamiyoshihara, Yusuke, Ghironzi , Jérémie, Kempthorne, Christine J., Hooton, Kevin, Bulot, Blandine, Kanellis, Vassilios, Mcnulty, James, Lam, Nghi, Nadeau, Louis-Felix, Pautler, Michael, Tieman, Denise M., Klee, Harry J. and Goulet, Charles | 2021 | A flavin-dependent monooxygenase produces nitrogenous tomato aroma volatiles using cysteine as a nitrogen source | Proceedings of the National Academy of Sciences 119: e2118676119 |
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Hamid Razifard, Alexis Ramos, Audrey L Della Valle, Cooper Bodary, Erika Goetz, Elizabeth J Manser, Xiang Li, Lei Zhang, Sofia Visa, Denise Tieman, Esther van der Knaap, Ana L Caicedo |
2020 | Genomic Evidence for Complex Domestication History of the Cultivated Tomato in Latin America | Molecular Biology and Evolution 37: 1118-1132 |
| Haley M. Sater, Lorenzo N. Bizzio, Denise M. Tieman, Patricio D. Muñoz | 2020 | A Review of the Fruit Volatiles Found in Blueberry and Other Vaccinium Species | J. Agric. Food Chem. 68: 5777-5786 |
| Koltun S, MacIntosh A, Goodrich‐Schneider R, Klee HJ, Hutton S, Sarnoski P. | 2020 | Sensory and chemical characteristics of tomato juice from fresh market cultivars with comparison to commercial tomato juice | Flavour and Fragrance J. 36: 121-136 |
| Kamiyoshihara Y, Miyajima S, Miyagawa Y, Moriyama K, Mizuno S, Goulet C, Klee H, Tateishi A. | 2020 | Functional divergence of principal alcohol o-acyltransferase for biosynthesis of volatile acetate esters among tomato wild species (Solanum Sect. Lycopersicon) | Plant Sci. 2020 Nov;300:110612. |
| Li X, Tieman D, Liu Z, Chen KS, Klee HJ. | 2020 | Identification of a lipase gene with a role in tomato fruit short-chain fatty acid-derived flavor volatiles by genome-wide association | Plant J. 2020 Nov;104(3):631-644. |
| Alonge M, Wang X, Benoit M, Soyk S, Pereira L, Zhang L, Suresh H, Ramakrishnan S, et al. | 2020 | Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato | Cell. 2020 Jul 9;182(1):145-161.e23. |
| Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z. | 2019 | The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor | Nat Genet. 2019 Jun;51(6):1044-1051. |
| Cao X, Xie K, Duan W, Zhu Y, Liu M, Chen K, Klee H, Zhang B. | 2019 | Peach Carboxylesterase PpCXE1 Is Associated with Catabolism of Volatile Esters. | J Agric Food Chem. 2019 May 8;67(18):5189-5196. |
| Zhu G, Gou J, Huang S, Klee HJ. | 2019 | Next-Gen Approaches to Flavor-Related Metabolism | Annu Rev Plant Biol. 2019 Apr 29;70:187-212. |
| Zhao J, Sauvage C, Zhao J, Bitton F, Bauchet G, Liu D, Huang S, Tieman D, Klee H, Causse M. | 2019 | Meta-analysis of genome-wide association studies provides insights into genetic control of tomato flavor | Nat Commun. 2019 Apr 4;10(1):1534. |
| Wu B, Cao X, Liu H, Zhu C, Klee H, Zhang B, Chen K. | 2019 | UDP-glucosyltransferase PpUGT85A2 controls volatile glycosylation in peach | J Exp Bot. 2019 Feb 5;70(3):925-936. |
| López-Gresa M, Payá C, Ozáez M, Rodrigo I, Conejero V, Klee H, Bellés J, Lisón P. | 2018 | A New Role For Green Leaf Volatile Esters in Tomato Stomatal Defense Against Pseudomonas syringe pv. tomato | Front Plant Sci. 2018 Dec 18;9:1855. |
| Zhu Y, Sarnoski PJ, Klee HJ. | 2018 | Development and characterization of a high quality plum tomato essence | Food Chem. 2018 Nov 30;267:337-343. |
| Garbowicz K*, Liu Z*, Alseekh S, Tieman D, Taylor M, Kuhalskaya A, Ofner I, Zamir D, Klee H, Fernie A, Brotman Y. | 2018 | Quantitative Trait Loci Analysis Identifies a Prominent Gene Involved in the Production of Fatty Acid-Derived Flavor Volatiles in Tomato | Mol Plant. 2018 Sep 10;11(9):1147-1165. |
| Tieman DM, Klee HJ. | 2018 | The genetics of fruit flavour preferences | Nature Reviews Genetics volume 19, pages347–356(2018) |
| Li J, Avila C, Tieman D, Klee H, Goggin F. | 2018 | A Comparison of the Effects of FATTY ACID DESATURASE 7 and HYDROPEROXIDE LYASE on Plant-Aphid Interactions | Int. J. Mol. Sci. 2018, 19(4), 1077. |
| D Tieman et al. | 2017 | A chemical genetic roadmap to improved tomato flavor | Science. vol. 355 (6323), 391-394. |
| Kamiyoshihara Y, Tieman DM, Klee HJ. | 2016 | Analyses of Plant UDP-Dependent Glycosyltransferases to IdentifyTheir Volatile Substrates Using Recombinant Proteins. | In: Plant Signal Transduction: Methods and Protocols, Methods in Molecular Biology. Botella JR, Botella MA (eds.). vol. 1363, 199-207. |
| Goulet C, Kamiyoshihara Y, Lam N, Richard T, Taylor M, Tieman D, Klee HJ. | 2015 | Divergence in the enzymatic activities of a tomato and Solanum pennellii alcohol acyltransferase impacts fruit volatile ester composition | Molecular Plant. 8: 153-162. |
| Shen J, Tieman D, Jones JB, Taylor MG, Schmelz E, Huffaker A, Bies D, Chen K, Klee HJ. | 2014 | A 13-lipoxygenase, TomloxC, is essential for synthesis of C5 flavour volatiles in tomato | J. Exp. Botany 65: 419-428. |
| Bartoshuk LM, Klee HJ. | 2013 | Better fruits and vegetables through sensory analysis | Current Biology 23: R374-R378. |
| Goulet C, Mageroy MH, Lam N, Floystad A, Tieman DM, Klee HJ. | 2012 | Role of an esterase in flavor volatile variation within the tomato clade | Proceedings of the National Academy of Sciences. USA. 109: 19009-19014. |
| Kamiyoshihara Y, Tieman DM, Huber DJ, Klee HJ. | 2012 | Ligand-induced alterations in the phosphorylation state of ethylene receptors in tomato fruit | Plant Physiology 160: 488-497. |
| Tieman DM, McIntyre L, Blandon-Ubeda A, Bies D, Odabasi A, Rodriguez G, van der Knaap E, Taylor M, Goulet C, Mageroy MH, Snyder D, Colquoun T, Moskowitz H, Sims C, Clark D, Bartoshuk L, Klee H. | 2012 | The chemical interactions underlying tomato flavor preferences | Current Biology 22:1-5. |
| Guan JC, Suzuki M, Koch K, Klee HJ, McCarty DR. | 2012 | Diverse roles of strigolactone signaling in maize architecture and the uncoupling of a branching-specific subnetwork | Plant Physiology 160: 1303-1317. |
| Kochevenko A, Klee HJ, Fernie AR, Araujo W. | 2012 | Molecular identification of a further branched-chain aminotransferase 7 (BCAT7) in tomato plants | Journal of Plant Physiology 169: 437-443. |
| Kochevenko A, Araujo WL, Maloney GS, Tieman DM, Do PT, Taylor MG, Klee HJ, Fernie AR. | 2012 | Catabolism of branched chain amino acids supports respiration but not volatile synthesis in tomato fruits | Molecular Plant 5: 366-375. |
| Lee JM, Joung J-G, McQuinn R, Chung, M-Y, Fei Z, Tieman D, Klee H, Giovannoni J. | 2012 | Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation | Plant Journal 70: 191-204. |
| Mageroy MH, Floystad A, Taylor MG, Tieman DM, Klee HJ. | 2012 | A Solanum lycopersicum catechol-O-methyltransferase involved in synthesis of the flavor molecule guaiacol | Plant Journal 69: 1043-1051. |
| Fernie AR, Klee HJ. | 2011 | The use of natural genetic diversity in the understanding of metabolic organization and regulation | Frontiers in Plant Physiology. 2: 1-10. |
| Fei ZJ, Joung JG, Tang XM, Zheng Y, Huang MY, Lee JM, McQuinn R, Tieman DM, Alba R, Klee HJ, Giovannoni JJ. | 2011 | Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics | Nucleic Acids Res. 39 Supplement: 1 Pages: D1156-D1163. |
| Zhang Y, Yin X, Xiao Y, Zhang Z, Li S, Liu X, Zhang B, Yang X, Grierson D, Jiang G, Klee H, Chen K. | 2011 | Identification of genes in the phenylalanine metabolic pathway by ectopic expression of a MYB transcription factor in tomato fruit | The Plant Cell 23:2738-2753 |
| Klee, HJ. | 2010 | Improving the flavor of fresh fruits: genomics, biochemistry, and biotechnology | New Phytologist 187:44-56. |
| Dal Cin, V, Kevany, B, Fei, Z, and Klee, HJ. | 2009 | Identification of Solanum habrochaites loci that quantitatively influence tomato fruit ripening-associated ethylene emissions | Theor. Appl. Genet. DOI 10.1007/s00122-009-1119-x. |
| Mathieu, S, Dal Cin, V, Fei, Z, Li, H, Bliss, P, Taylor, MG, Klee, HJ and Tieman, DM. | 2009 | Flavour compounds in tomato fruits: identification of loci and potential pathways affecting volatile composition | J. Exp. Bot. 60:325-337. |
| Vogel, JT, Tan, B-C, McCarty, DR and Klee, HJ. | 2008 | The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificity, cleaving multiple carotenoids at two different bond positions | J. Biol. Chem. 238:11364-11373. |
| Kevany B, Taylor M and Klee HJ. | 2008 | Fruit-specific suppression of the ethylene receptor LeETR4 results in early-ripening tomato fruit | Plant Biotech. J. 6:295-300. |
| Kevany B, Taylor M, Dal Cin V. and Klee HJ. | 2007 | Ethylene receptor degradation controls the timing of ripening in tomato fruit | The Plant Journal 51:458-467. |
| Tieman DM, Loucas H, Kim J-Y, Clark D and Klee HJ. | 2007 | Tomato phenylacetaldehyde reductases catalyze the last step in the synthesis of the aroma volatile 2-phenylethanol | Phytochemistry 68:2660-2669. |
| Tieman, D.M., M. Taylor, N. Schauer, A.R. Fernie, A.D. Hanson, and H.J. Klee. | 2006 | Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde | Proceedings of the National Academy of Sciences USA 103:8287-8292. |
| Tieman, D.M., M. Zeigler, E.A. Schmelz, M.G. Taylor, P. Bliss, M. Kirst and H.J. Klee. | 2006 | Identification of loci affecting flavour volatile emissions in tomato fruits | Journal of Experimental Botany 54:887-896. |
| Auldridge, M.E., A. Block, J.T. Vogel, C. Dabney-Smith, I. Mila, M. Bouzayen, M. Magallanes-Lundback, D. DellaPenna, D. McCarty and H.J. Klee. | 2006 | Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family | The Plant Journal 45:982-993. |
| Goff, S.A. and H.J. Klee. | 2006 | Plant volatile compounds: sensory cues for health and nutritional value? | SCIENCE 311: 815-819. |
| Block, A., E. Schmelz, P.J. O'Donnell, J.B. Jones and H.J. Klee. | 2005 | Systemic acquired tolerance to virulent bacterial pathogens in tomato | Plant Physiology 138:1481-1490. |
| Snowden, K., A.J. Simkin, B.J. Janssen, K.R. Templeton, H.M. Loucas, J.L. Simons, S. Karunairetnam, A.P. Gleave, D.G. Clark and H.J. Klee. | 2005 | The Decreased apical dominance1/Petunia hybrida CAROTENOID CLEAVAGE DIOXYGENASE8 gene affects branch production and plays a role in leaf senescence, root growth, and flower development | The Plant Cell 17: 746-759. |
| Block, A., E. Schmelz, J. Jones and H.J. Klee. | 2005 | Coronatine and salicylic acid: the battle between Arabidopsis and Pseudomonas for phytohormone control | Molecular Plant Pathology 6(1):79-83. |
| Simkin, A., S. Schwartz, M. Auldridge, M. Taylor and H. Klee. | 2004 | The tomato carotenoid cleavage dioxygenase 1 genes contribute to the formation of the flavor volatiles beta-ionone, pseudoionone, and geranylacetone | The Plant Journal 40: 882-892. |
| Klee, Harry J. | 2004 | Ethylene signal transduction. Moving beyond Arabidopsis | Plant Physiology 135:660-667. |
| Moussatche, P. and H. Klee. | 2004 | Autophosphorylation activity of the Arabidopsis ethylene receptor multigene family | Journal of Biological Chemistry 279: 48734-48741. |
| Shibuya, K., K. Barry, J. Ciardi, H. Loucas, B. Underwood, S. Nourizadeh, J. Ecker, H. Klee and D. Clark. | 2004 | The central role of PhEIN2 in ethylene responses throughout plant development in petunia | Plant Physiology 136:2900-2912. |
| Simkin, A., B. Underwood, M. Auldridge, H. Loucas, K. Shibuya, E. Schmelz, D. Clark and H. Klee. | 2004 | Circadian regulation of the PhCCD1 carotenoid cleavage dioxygenase controls emission of beta-ionone, a fragrance volatile of petunia flowers | Plant Physiology 136: 3504-3514. |
| O'Donnell, P., E. Schmelz, A. Block, O. Miersch, C. Wasternack, J. Jones, and H.J. Klee. | 2003 | Multiple hormones act sequentially to mediate a susceptible tomato pathogen defense response | Plant Physiology 133:1181-1189. |
| O'Donnell, P., E. Schmelz, P. Moussatche, S. Lund, J. Jones, and H.J. Klee. | 2003 | Susceptible to intolerance--a range of hormonal actions in a susceptible Arabidopsis pathogen response | Plant Journal 33:245-257. |
| Ciardi, J., D. Tieman, J. Jones, and H.J. Klee. | 2001 | Reduced expression of the tomato ethylene receptor gene LeETR4 enhances the hypersensitive response to Xanthomonas campestris pv. vesicatoria | Mol. Plant Microbe Interactions 14:487-495. |
| O'Donnell, P.J., J.B. Jones, F.R. Antoine, J.A. Ciardi, and H.J. Klee. | 2001 | Ethylene-dependent salicylic acid regulates an expanded cell death response to a plant pathogen | Plant Journal 25(3):315-323. |
| Tieman, D.M., J.A. Ciardi, M.G. Taylor, and H.J. Klee. | 2001 | Members of the tomato LeEIL (EIN3-like) gene family are functionally redundant and regulate ethylene responses throughout plant development | Plant Journal 26(1):47-58. |
| Ciardi, J.A., D.M. Tieman, S.T. Lund, J.B. Jones, R.E. Stall, and H.J. Klee. | 2000 | Response to Xanthomonas campestris pv. vesicatoria in tomato involves regulation of ethylene receptor gene expression | Plant Physiology 123:81-92. |
| Tieman, D.M., M.G. Taylor, J.A. Ciardi, and H.J. Klee. | 2000 | The tomato ethylene receptors NR and LeETR4 are negative regulators of ethylene response and exhibit functional compensation within a multigene family | PNAS 97:5663-5668. |
| Clark, D.G., E.K. Gubrium, J.E. Barrett, T.A. Nell, and H.J. Klee. | 1999 | Root formation in ethylene-insensitive plants | Plant Physiology 121:53-59. |
| Tieman, D.M. and H.J. Klee. | 1999 | Differential expression of two novel members of the tomato ethylene-receptor family | Plant Physiology 120:165-172. |
| Lashbrook, C.C., D.M. Tieman, and H.J. Klee. | 1998 | Differential regulation of the tomato ETR gene family throughout plant development | Plant Journal 15:243-252. |
| Lund, S.T., R.E. Stall, and H.J. Klee. | 1998 | Ethylene regulates the susceptible response to pathogen infection in tomato | Plant Cell 10:371-382. |
| Wilkinson, J.Q., M.B. Lanahan, D.G. Clark, A.B. Bleecker, C. Chang, E.M. Meyerowitz, and H.J. Klee. | 1997 | A dominant mutant receptor from Arabidopsis confers ethylene insensitivity in heterologous plants | Nature Biotech. 15:444-447. |
| Wilkinson, J., M. Lanahan, H-C Yen, J. Giovannoni, and H. Klee. | 1995 | An ethylene-inducible component of signal transduction encoded by never-ripe | Science 270:1807-1809. |
| Wilkinson, J., M. Lanahan, T. Conner, and H. Klee. | 1995 | Identification of mRNAs with enhanced expression in ripening strawberry fruit using polymerase chain reaction differential display | Plant Mol. Biol. 27:1097-1108. |
| Yen, H-C, S. Lee, S. Tanksley, M. Lanahan, H. Klee, and J. Giovannoni. | 1995 | The tomato Never-ripe locus regulates ethylene-inducible gene expression and is linked to a homolog of the Arabidopsis ETR1 gene | Plant Physiology 107:1343-1353. |
| Lanahan, M., H-C Yen, J. Giovannoni, and H. Klee. | 1994 | The never ripe mutation blocks ethylene perception in tomato | Plant Cell 6:521-530. |
| Klee, H.J. | 1993 | Ripening Physiology of Fruit from Transgenic Tomato (Lycopersicon esculentum) Plants with Reduced Ethylene Synthesis | Plant Physiology 102:911-916. |
| Romano, C., M. Cooper, and H. Klee. | 1993 | Uncoupling auxin and ethylene effects in transgenic tobacco and Arabidopsis plants. | Plant Cell 5:181-189. |
| Klee, H., M. Hayford, K. Kretzmer, G. Barry, and G. Kishore. | 1991 | Control of ethylene synthesis by expression of a bacterial enzyme in transgenic tomato plants | Plant Cell 3:1187-1193. |
| Medford, J., J.S. Elmer, and H. Klee. | 1991 | Molecular cloning and characterization of Arabidopsis thalianagenes expressed in shoot apical meristems. | Plant Cell 3:359-370. |
| Romano, C., M. Hein, and H. Klee. | 1991 | Inactivation of auxin in tobacco transformed with theindoleacetic acid-lysine synthetase gene of Pseudomonassavastanoi. | Genes and Dev. 5:438-446. |